Scientific Software
Catalogue of open-source tools
Open-source scientific software I have authored or co-authored. Most packages are available on CRAN and GitHub.
Bibliometrix
A comprehensive toolbox for science mapping and bibliometric analysis. Supports the complete workflow: data import, descriptive analysis, network and conceptual mapping, and visualisation.
→ bibliometrix.org
Biblioshiny
A user-friendly Shiny interface for Bibliometrix, enabling researchers to perform advanced bibliometric and science-mapping analyses without writing code.
TALL — Text Analysis for All
A general-purpose application for text-data analysis, supporting topic modelling, frequency analysis, clustering, and content classification.
→ github.com/massimoaria/tall
E2Tree
An explainable machine-learning approach based on ensemble trees. Generates interpretable models from complex data, with visual exploration of decision rules.
→ github.com/massimoaria/e2tree
DimensionsR
Programmatic access to the Dimensions API — publications, grants, clinical trials, and patents.
→ github.com/massimoaria/dimensionsR
PubmedR
An R interface to the PubMed API for searching, downloading, and analysing biomedical literature metadata — useful for systematic reviews and medical informatics.
→ github.com/massimoaria/pubmedR
contentanalysis
Tools for extracting and analysing scientific content from PDFs, including citation extraction and reference matching.
→ github.com/massimoaria/contentanalysis
openalexR
An R client for the OpenAlex API, providing access to open bibliographic metadata for scholarly publications, authors, institutions, and citations.
→ docs.ropensci.org/openalexR
PLS-SEM Matlab Toolbox
A Matlab / Octave package for Partial Least Squares Structural Equation Models.
→ github.com/massimoaria/PLS-SEM